This paper documents the proceedings of a capacity-building workshop dedicated to addressing the complex challenges within Muslim education in the Philippines. By convening educators, policymakers, and community leaders, the study examines the integration of the Madrasah education system into the national curriculum and the implementation of the Bangsamoro Education Code. Key discussions focus on improving teacher competency, securing sustainable funding, and developing culturally relevant learning materials that reflect the unique identity of Muslim Filipino students. The research emphasizes the importance of a dual-track educational approach that balances religious foundations with contemporary academic standards to foster social cohesion and regional development. Ultimately, the proceedings advocate for strengthened institutional support and collaborative partnerships to ensure equitable access to quality education for Muslim communities.